The Storage Authentication Failed error usually means you didn't load the machine in the proper sequence. And can only be cleared by wiping fully and reloading again.
In a nutshell. You must do it in this order.
1. Boot with ekey and diag key plugged in. On the diag menu, check all 3 boxes to clear NVRAM, SafeStorage, and the Drive and click to wipe all three. Once it completes, click the option to reboot. Once you hear the brainbox "beep", power off the machine.
2. You must have a FAT32 formatted USB flash drive with ONLY the OS loader file on it, and no other files. Plug in both the ekey and USB flash drive with the OS loader file and power on. The OS should load and tell you when it is completed and to power down. Turn off the machine at this point. (Do not load games by plugging in the ekey and a USB flash drive with game loaders on it, or with the OS loader and game loader files on the same USB flash drive and powering on the machine! If you do this, it will load them, but when you reboot, your machine will do the same and display "Storage Authentication Failed" and you'll have to start all over again.) You need one USB drive with only the OS loader file, and another USB drive with only the game loader files on it.
3. Remove the ekey and USB flash drive and power on. It will take a bit, but it should bring you to the "Configuration Required" screen. Insert the ekey and complete basic machine configuration. When you get to the page on adding games, skip that portion until you're no longer prompted to do anything specific. It should tell you to remove the ekey, and when you do, it will display a "No Games Configured" screen.
Now plug the ekey back in, and plug in the USB flash drive with your games on it. Now go to Setup > Game > Manage Packages and select the games to load to the machine.
Once that completes, it will make you exit, when you do, unplug the ekey and plug it back in to get to the ekey menu again. Now go to Setup > Game > Enable/disable Games and configure the paytable and enable each game you want.
Once you have done this, remove the ekey and the USB flash drive and close up the machine so all doors indicate they are closed.
It should display the games you enabled and play normally. If it displays a game but won't play, accept bills etc. Check again to ensure all doors are closed and it indicates they are closed on the screen. If any indicate they are open, it won't allow to you add credits, etc. until all doors indicate they are closed.