This is now the fun part of a process of elimination.
The fact that the original board passed the tests but after a few rough crashes the timer did not pass, that's pretty normal. The new board is probably just a bit more tolerant, there were about 4 different revisions of those MK5 boards. So I bet the original board is probably fine.
What colour is the Power supply? If its a gold colour then its probably that.
Also, try this, leave in the Comms board (on the right side, has little loop wires etc), but take out the Driver board (on the left). Non touch screen AU/NSW games will boot to the graphics screen without the driver board, ofcorse nothing will work, but if the PSU has issues sustaining power it might just be enough to get it booting or not..